Index A | B | C | D | F | G | H | I | J | L | M | N | P | R | S | T A animate_particle_positions() (in module sulfur_simulation.show_simulation) attempted_jump_counter (sulfur_simulation.scattering_calculation.SimulationResult attribute) B BaseRate (class in sulfur_simulation.hopping_calculator) BaseRateHoppingCalculator (class in sulfur_simulation.hopping_calculator) C cached() (in module sulfur_simulation.cache) CachedFunction (class in sulfur_simulation.cache) call_cached() (sulfur_simulation.cache.CachedFunction method) call_uncached() (sulfur_simulation.cache.CachedFunction method) D delta_k_array (sulfur_simulation.isf.ISFParameters property) delta_k_max (sulfur_simulation.isf.ISFParameters attribute) diagonal_rate (sulfur_simulation.hopping_calculator.SquareBaseRate attribute) F form_factor (sulfur_simulation.isf.ISFParameters attribute) G get_all_amplitudes() (in module sulfur_simulation.isf) get_amplitudes() (in module sulfur_simulation.isf) get_dephasing_rates() (in module sulfur_simulation.isf) get_figure() (in module sulfur_simulation.util) get_hopping_probabilities() (sulfur_simulation.hopping_calculator.BaseRateHoppingCalculator method) (sulfur_simulation.hopping_calculator.HoppingCalculator method) get_lennard_jones_potential() (in module sulfur_simulation.hopping_calculator) get_timeframe_str() (in module sulfur_simulation.show_simulation) grid (sulfur_simulation.hopping_calculator.BaseRate property) (sulfur_simulation.hopping_calculator.HexagonalBaseRate property) (sulfur_simulation.hopping_calculator.SquareBaseRate property) H HexagonalBaseRate (class in sulfur_simulation.hopping_calculator) hopping_calculator (sulfur_simulation.scattering_calculation.SimulationParameters attribute) HoppingCalculator (class in sulfur_simulation.hopping_calculator) I initial_positions (sulfur_simulation.scattering_calculation.SimulationParameters property) InteractingHoppingCalculator (class in sulfur_simulation.hopping_calculator) ISFParameters (class in sulfur_simulation.isf) J jump_count (sulfur_simulation.scattering_calculation.SimulationResult attribute) L lattice_dimension (sulfur_simulation.scattering_calculation.SimulationParameters attribute) LineDefectHoppingCalculator (class in sulfur_simulation.hopping_calculator) load_or_call_cached() (sulfur_simulation.cache.CachedFunction method) load_or_call_uncached() (sulfur_simulation.cache.CachedFunction method) M module sulfur_simulation sulfur_simulation.cache sulfur_simulation.hopping_calculator sulfur_simulation.isf sulfur_simulation.scattering_calculation sulfur_simulation.show_simulation sulfur_simulation.util N n_delta_k (sulfur_simulation.isf.ISFParameters property) n_particles (sulfur_simulation.scattering_calculation.SimulationParameters attribute) n_timesteps (sulfur_simulation.scattering_calculation.SimulationParameters attribute) normalized_directions (sulfur_simulation.hopping_calculator.BaseRateHoppingCalculator property) P params (sulfur_simulation.isf.ISFParameters attribute) plot_dephasing_rates() (in module sulfur_simulation.isf) plot_isf() (in module sulfur_simulation.isf) plot_mean_jump_rates() (in module sulfur_simulation.show_simulation) positions (sulfur_simulation.scattering_calculation.SimulationResult attribute) R rate (sulfur_simulation.hopping_calculator.HexagonalBaseRate attribute) run_simulation() (in module sulfur_simulation.scattering_calculation) S SimulationParameters (class in sulfur_simulation.scattering_calculation) SimulationResult (class in sulfur_simulation.scattering_calculation) SquareBaseRate (class in sulfur_simulation.hopping_calculator) straight_rate (sulfur_simulation.hopping_calculator.SquareBaseRate attribute) SULFUR_IS_COOL (in module sulfur_simulation) sulfur_simulation module sulfur_simulation.cache module sulfur_simulation.hopping_calculator module sulfur_simulation.isf module sulfur_simulation.scattering_calculation module sulfur_simulation.show_simulation module sulfur_simulation.util module T timed() (in module sulfur_simulation.cache) times (sulfur_simulation.scattering_calculation.SimulationParameters property)